Chemistry Toolkit for Confluence
Chemistry Toolkit for Confluence

Embed 2D and 3D chemical structures, chemical equations and LaTeX math in Confluence

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3D Molecular Structures

3D Molecular Structures

From PDB or MOL files
Create 2D chemical structures from SMILES text

Create 2D chemical structures from SMILES text

Just paste and go.
Create 2D chemical structures from InChI text

Create 2D chemical structures from InChI text

LaTeX math and chemical equations

LaTeX math and chemical equations

Multiple macros for your chemistry and scientific needs

  • InChI macro
    • Colour coding for different elements
    • Set height and width
  • SMILES macro
    • Colour coding for different elements
    • Set height and width
  • 3D Molecule macro
    • Full 3D visualisation for PDB files
    • Render 3D structure from attached file
    • Set height and width
  • LaTeX macros
    • Inline or block
    • Renders LaTeX notation to mathematical & chemical equations
    • Support LaTeX and mhchem syntax
  • Table from CSV (with Rendering) macro
    • Takes an attached CSV
    • Renders to table based on the header row
    • Renders the following
      • InChI format to 2D chemical structures
      • LaTeX notation to mathematical & chemical equations
      • SMILES format to 2D chemical structures
      • web and email links
      • markdown format links
    • Table sorts on header click
      • sort either numeric or alpha numeric, based on cell contents
      • rendered links are sorted on the basis of the link text
    • wrapping or no wrap on cell contents
  • Table from Source (with Rendering) macro
    • Takes input from a source
    • Renders to table based on the header row
    • Renders the following
      • InChI format to 2D chemical structures
      • LaTeX notation to mathematical & chemical equations
      • SMILES format to 2D chemical structures
      • web and email links
      • markdown format links
    • Table sorts on header click
      • sort either numeric or alpha numeric, based on cell contents
      • rendered links are sorted on the basis of the link text
    • wrapping or no wrap on cell contents
  • Further macros to follow as requested